Package com.metsci.glimpse.dnc.convert

Class Flat2Query.QueryDatabase

java.lang.Object

com.metsci.glimpse.dnc.convert.Flat2Query.QueryDatabase

Enclosing class:

Flat2Query

public static class Flat2Query.QueryDatabase
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
it.unimi.dsi.fastutil.objects.Object2IntMap<String>	flatCoverageNums
File	flatDir
it.unimi.dsi.fastutil.objects.Object2IntMap<String>	flatLibraryNums

Constructor Summary

Constructors

Constructor	Description
QueryDatabase(File flatDir, DncProjection proj, ExecutorService exec)

Method Summary

Modifier and Type	Method	Description
Flat2Query.Tree	createTree(DncLibrary library, DncCoverage coverage)
it.unimi.dsi.fastutil.ints.Int2ObjectMap<DncFeature>	loadFeatures(DncChunks.DncChunkKey chunkKey, it.unimi.dsi.fastutil.ints.IntCollection featureNums)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

flatDir

public final File flatDir

flatLibraryNums

public final it.unimi.dsi.fastutil.objects.Object2IntMap<String> flatLibraryNums

flatCoverageNums

public final it.unimi.dsi.fastutil.objects.Object2IntMap<String> flatCoverageNums

Constructor Detail

QueryDatabase

public QueryDatabase(File flatDir,
                     DncProjection proj,
                     ExecutorService exec)
              throws IOException

Throws:

IOException

Method Detail

loadFeatures

public it.unimi.dsi.fastutil.ints.Int2ObjectMap<DncFeature> loadFeatures(DncChunks.DncChunkKey chunkKey,
                                                                         it.unimi.dsi.fastutil.ints.IntCollection featureNums)

createTree

public Flat2Query.Tree createTree(DncLibrary library,
                                  DncCoverage coverage)