Package com.metsci.glimpse.dnc.convert

Class Flat2Query.QueryCache

java.lang.Object

com.metsci.glimpse.dnc.convert.Flat2Query.QueryCache

Enclosing class:

Flat2Query

public static class Flat2Query.QueryCache
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
List<DncCoverage>	coverages
List<DncLibrary>	libraries

Constructor Summary

Constructors

Constructor	Description
QueryCache(Flat2Query.QueryCacheConfig config, int numConverterThreads)

Method Summary

Modifier and Type	Method	Description
void	getChunk(DncChunks.DncChunkKey chunkKey, Function<DncChunks.DncChunkKey,Flat2Render.DncChunkPriority> priorityFunc, Consumer<DncTree> callback)
it.unimi.dsi.fastutil.ints.Int2ObjectMap<DncFeature>	loadFeatures(DncChunks.DncChunkKey chunkKey, it.unimi.dsi.fastutil.ints.IntCollection featureNums)
void	runQuery(DncQuery query, Function<DncChunks.DncChunkKey,Flat2Render.DncChunkPriority> priorityFn, BiConsumer<DncChunks.DncChunkKey,Collection<DncFeature>> callback)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

libraries

public final List<DncLibrary> libraries

coverages

public final List<DncCoverage> coverages

Constructor Detail

QueryCache

public QueryCache(Flat2Query.QueryCacheConfig config,
                  int numConverterThreads)
           throws IOException

Throws:

IOException

Method Detail

runQuery

public void runQuery(DncQuery query,
                     Function<DncChunks.DncChunkKey,Flat2Render.DncChunkPriority> priorityFn,
                     BiConsumer<DncChunks.DncChunkKey,Collection<DncFeature>> callback)

loadFeatures

public it.unimi.dsi.fastutil.ints.Int2ObjectMap<DncFeature> loadFeatures(DncChunks.DncChunkKey chunkKey,
                                                                         it.unimi.dsi.fastutil.ints.IntCollection featureNums)

getChunk

public void getChunk(DncChunks.DncChunkKey chunkKey,
                     Function<DncChunks.DncChunkKey,Flat2Render.DncChunkPriority> priorityFunc,
                     Consumer<DncTree> callback)